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Tag: RStudio

How to Use Binder and R for Reproducible Research

In a previous post, we learned how to use Binder and Python for reproducible research. Now we are going to learn how to create a Binder for our data analysis in R, so it can be fully reproduced by other researchers. More specifically, in this post we will learn how to use Binder for reproducible research.

Many researchers upload their code for data analysis and visualization using git (e.g., to GitHub, Gitlab).

No doubt, uploading your R scripts is great. However, we also need to make sure that we share the complete computational environment so that our code can be re-run and so that others can reproduce the results. That is, to have a fully reproducible example, we need a way to capture the different versions of the R packages we were using, at that particular time.

Why Spyder is the Best Python IDE for Science

Spyder is the best Python IDE that I have tested so far for doing data analysis, but also for plain programming. In this post I will start to briefly describe the IDE. Following the description of this top IDE the text will continue with a discussion of my favorite features. You will also find out how to install Spyder on Ubuntu 14.04 and at the end of the post you will find a comparison of Rodeo (a newer IDE more RStudio like) and Spyder.

When I started programming in Python I used IDLE which is the IDE that you will get with your installation of Python (e.g., on Windows computers). I actually used IDLE IDE for some time. It was not until I started to learn R and found  RStudio IDE. I thought that RStudio was great (and it still is!). However, after learning R and RStudio I started to look for a better Python IDE.

RStudio-like Python IDEs – Rodeo and Spyder

In this post I will discuss two Python Integrated Development Environments (IDE); Rodeo and Spyder. Both Python IDEs might be useful for researchers used to work with R and RStudio (a very good and popular IDE for R) because they offer similar functionalities and graphical interfaces as RStudio. That is, Rodeo and Spyder can both be seen as the RStudio for Python.